"Bowtie" quad are not currently allowed by spec (but it wasn't always this way). I wrote a program a long time ago to bulk fix the outstanding issues but I'm not sure if I have the source any more. I do, however, still have my error fix library and making a new program would be fairly trivial.
Sanitizing quad errors
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Sanitizing quad errors - by Nicola - 2014-11-04, 12:04
Re: Sanitizing quad errors - by Orion Pobursky - 2014-11-04, 12:26
Re: Sanitizing quad errors - by Roland Melkert - 2014-11-04, 22:57
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